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GO enrichment analysis

查看更多GO富集系列工具

1:
Add file Example
2:
Current default selection is Model organism, the Ensembl ID background gene file is used on the platform. Please ensure that the Ensembl ID is used for the target genes file in the previous step
Preview the reference document
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Dynamic GO enrichment analysis使用教程

Scope of application:

The gene sets of 18 common species can be enriched and analyzed, including bovine, zebrafish, human, macaque, mouse, rat, pig, elegans, drosophila, Arabidopsis, rice, tomato, wheat, corn, yeast, goat, chicken and indica rice, and 3 genomic versions are provided.

The background genes of the species can also be prepared by themselves for enrichment analysis.

 

Input:

①File format: a tab delimited text file. If your data is not TAB delimited, you can use Excel to convert it. you can also enter two columns,the second column is the multiple of multiple log2, greater than 0 up, less than 0 down

②Gene set: genes need enrichment analysis. Gene IDs must be separated by new lines and included in the background set.

③ Background set: For model organism, pre-compiled references are available, including rice, Arabidopsis thaliana, mice, rat, zebra fish, caenorhabditis elegans, gallus, drosophila melanogaster, and homo sapiens. Gene ID and transcript ID are optional according to your gene set IDs.
For other organism, you need to upload a background set with GO IDs. There are two types of file formats: the first column is gene names, and the second column is GO ID; or the first column is gene names while other columns are GO IDs of this gene. For example::

生物云平台 生物云平台

总览



Results statistics



histogram of second level GO terms



Senior Bubble plot


Results Display      (Click " project ID" to view different analysis results)