Citing OmicShare Tools:

If you use OmicShare Tools, we hope you cite it in the paper, for example: XXXX analysis was performed using the OmicShare tools, a free online platform for data analysis (http://www.omicshare.com/tools).



reporttSNE

Nonlinear dimension reduction

90 Member Discounts

0

reportnmds

Interactive NMDS,abundance or distance,Senior adjust

75 Member Discounts

0

Interactive PCoA

Interactive PCoA,abundance or distance,Senior adjustment

80 Member Discounts

0

reporthistogram

reporthistogram

75 Member Discounts

0

reportline

Show the data under the gradient change

75 Member Discounts

0

reportbox2

Show data between groups

75 Member Discounts

0

reportbox

Show the data between samples

75 Member Discounts

0

reportviolin2

Visualization of data distribution patterns

Members Only

1

reportviolin

Visualization of data distribution patterns

Members Only

1

reportrda

Calculate and show the relationship among explanatory variables, response variables and samples

Members Only

0

Correlation analysis between groups

Show the pairwise correlation of all elements between two tables

Members Only

1

Correlation analysis within group

Calculate the pairwise correlation of all elements in the table

Members Only

1

reportcca

Calculate and show the relationship among explanatory variables, response variables and samples

Members Only

0

PCA

Convert linearly massive variables into several important variables and draw a two-dimension score plot.

100 Member Discounts

0

Heatmap

A graphical representation of data matrix with colors.

Members Only

17

Letter identification column chart

Multiple comparisons were used to analyze differences between groups, and the degree of difference was indicated by letters.

5 VIP Free

9

paired differential expression analysis

Find out differential expression genes via edgeR based on paired relationship

10 VIP Free

7

paired t test

This tool is used to estimate whether two groups have significant difference via t-test based on paired relationship.

5 VIP Free

5

Enrichment bar chart

Enrichment analysis results draw bar plot .

10 VIP Free

28

box_mul_sig

T-test and rank sum test were performed between multiple groups of samples, and a box plot was drawn. Significant differences between groups marked wi

5 VIP Free

22

box_two_sig

T test and rank sum test were performed between the two groups of samples, and a box plot was drawn. Significant differences were marked between the

5 VIP Free

13

tSNE

Reduce multiple samples to two-dimensional plane via the nonlinear reduction model. Not available for sing-cell data for the moment.

5 VIP Free

12

Broken axis histogram

Draw a Broken axis histogram chart with tabular data with a table head

5 VIP Free

10

Significance marker difference analysis(Multiple g

T-test and rank sum test were performed between multiple groups of samples, and significant differences between groups marked with significant differe

5 VIP Free

20

Significance marker difference analysis(Two groups

T test and rank sum test were performed between the two groups of samples, and significant differences were marked between the groups.

5 VIP Free

10

ternary_plot

Draw a ternary graph with tabular data with a header.

5 VIP Free

17

plantTFdb_annotation

align nucleic acid or protein sequence to plantTFdb to predicte TF families

1200 Member Discounts

14

CAZy annotation

Sequences annotation for CAZy database.

1200 Member Discounts

8

Pfam annotation

Sequences annotation for Pfam database.

1500 Member Discounts

13

eggNOG annotation

Sequences annotation for eggNOG database

1200 Member Discounts

6

KOG annotation

Sequences annotation for KOG database

1200 Member Discounts

12

COG annotation

Sequences annotation for COG database

1800 Member Discounts

13

CARD annotation

Resistence gene annotation in CARD

1200 Member Discounts

4

VFDB annotation

annation for virulence factors in VFDB

1200 Member Discounts

6

ARDB annotation

annotation for bacteria resistance protein in ARDB

1500 Member Discounts

5

NR Annotion

align the query sequences to the NR database.

1800 Member Discounts

12

KEGG Annotation

align the query sequences to the KEGG database.

1800 Member Discounts

44

GO Annotation

align the query sequences to the GO database.

1800 Member Discounts

48

PHI annotation

Sequences annotation for PHI database.

1200 Member Discounts

11

AnimalTFDB annotation

align nucleic acid or protein sequences to animalTFBD to predicte TF families

1200 Member Discounts

3

Swiss-Prot annotation

align the query sequences to the Swiss-Prot protein database to obtain functional annotations

1800 Member Discounts

11

UpSet Venn

Shows all possible logical relations between different data sets

10 VIP Free

54

pcoa

Using the linear model to reduce the sample distance dimension display

15 VIP Free

63

Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

30 VIP Free

205

rank_sum_test

this tool determine if two groups of data are significantly different from each other

5 VIP Free

24

circos

Draw a circus plot to display relationship between sample and taxa

5 VIP Free

105

GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

30 VIP Free

236

t-test

this tool determine if two groups of data are significantly different from each other

5 VIP Free

77

violin2

Using several table datas to draw a grouped violin diagram

10 VIP Free

49

Quadrant plot

correlation analysis between transcriptome and proteome

5 VIP Free

46

ICA

Inter group

10 VIP Free

118

ICA

within groups

10 VIP Free

109

Violin plot

Visualizing data with a Violin plot

10 VIP Free

91

cca/rda

cca

10 VIP Free

72

roc

ROC curve, is a graphical plot that illustrates the diagnostic ability of a binary classifier system(e.g. biomarker)

5 VIP Free

56

nmds

Using the non-linear model to reduce the sample distance dimension display

5 VIP Free

104

pcoa

Using the linear model to reduce the sample distance dimension display

5 VIP Free

147

Differential metabolites analysis

Differential metabolites analysis tool is used to screen out differential metabolites between two groups of samples.

5 VIP Free

196

fq2fa

Covert fastq files to fasta files

2 VIP Free

49

OSGO

Plotting GO (gene ontology) annotations (the second level) in three GO ontologies from one or more groups of data.

5 VIP Free

204

Decoding SAM flag

Identify the properties of a read based on its SAM flag value or obtain a SAM flag value based on the reads properties.

0

33

Pie chart

Demonstrate file data in a pie chart.

2 VIP Free

124

Three-dimension scatter plot

Demonstrate file data in a three-dimension scatter plot.

2 VIP Free

86

Linear Regression plot

Plotting the relationship between a scalar dependent variable y and one explanatory variable x.

2 VIP Free

101

Weighted Interaction Network

Constructing weighted molecular interaction networks.

5 VIP Free

152

Differential Expression Analysis

Find out differentially expressed genes between two groups of data.

10 VIP Free

329

Three-dimension PCA

Convert linearly massive variables into several important variables and draw a three-dimension score plot.

5 VIP Free

178

Senior Scatter Plot

Demonstrate file data in a scatter plot with auxiliary lines and correlation coefficient.

5 VIP Free

129

COG/KOG Histogram

Draw a histogram using COG/KOG IDs or COG/KOG codes of genes.

5 VIP Free

145

Senior Bubble plot

Demonstrate file data in a senior bubble plot.

15 VIP Free

483

SVG Format Conversion

Convert SVG images into other formats.

2 VIP Free

92

Krona chart

Krona allows hierarchical data to be explored with zoomable pie charts.

2 VIP Free

56

MA plot

Displaying significant difference between two groups of data.

2 VIP Free

117

Volcano plot

Displaying significant difference between two groups of data.

5 VIP Free

414

Directed Interaction Network

Constructing directed molecular interaction networks.

5 VIP Free

157

GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

15 VIP Free

738

Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

15 VIP Free

747

Trend Analysis

Cluster genes with similar expression patterns

15 VIP Free

363

Venn

Shows all possible logical relations between different data sets

10 VIP Free

652

Heatmap

A graphical representation of data matrix with colors.

15 VIP Free

1043

Bubble plot

Visualizing data with a bubble plot.

5 VIP Free

179

Boxplot

Visualizing data with a boxplot.

3 VIP Free

216

Area graph

Visualizing data with an area graph

3 VIP Free

47

Frequency Histogram

Demonstrate the frequency distribution of file data in a frequency histogram.

2 VIP Free

81

Histogram

Demonstrate file data in a histogram.

2 VIP Free

122

Line chart

Demonstrate file data in a line chart.

2 VIP Free

105

Scatter plot

Demonstrate file data in a scatter plot.

5 VIP Free

120

Hierarchical Cluster Analysis (HCA)

Cluster data with similar properties.

5 VIP Free

261

Two-dimension PCA

Convert linearly massive variables into several important variables and draw a two-dimension score plot.

10 VIP Free

455

MUSCLE-Multiple Sequences Alignment

Multiple Sequences Alignment with Muscle program

2 VIP Free

81

BLAST-Two Sequences Alignment

Local alignment between two sequences to measure their similarity

5 VIP Free

105

CDS2protein

Translating CDS to protein according to the Standard Code (transl_table=1) or the Bacterial, Archaeal and Plant Plastid Code (transl_table=11)

2 VIP Free

62

DNA/RNA Conversion

Conversion between DNA and RNA

2 VIP Free

47

Sequence Interception

Cut out a designated section of sequence.

2 VIP Free

63

Sequence Length Filtering

Filter sequences with specific length.

2 VIP Free

55

Sequence Length Calculator

Calculate sequence length.

2 VIP Free

62

Sequence Format Painter

An extremely versatile application for sequence reformatting.

2 VIP Free

46

Data filter

Pick out data of interest from the input table

5 VIP Free

209

Table transposition

Transposing the row and column in a table

2 VIP Free

108

Multiple tables merging

Merging more than two tables according to the merging type and default value.

2 VIP Free

141

Two tables merging

Merging two tables according to the merging type and default value.

2 VIP Free

219