GeneID Gene_length 20-1-Expression 21-2-Expression 20-1-RPKM 21-2-RPKM log2 Ratio(21-2/20-1) Up-Down-Regulation(21-2/20-1) P-value FDR Description GO Component GO Function GO Process Unigene0000096 565 31 5 2.564864786 0.400161353 -2.680229026 Down 4.69E-06 3.07E-05 AT1G42550 [Arabidopsis thaliana] GO:0016020//membrane - GO:0007010//cytoskeleton organization;GO:0009658//chloroplast organization Unigene0000149 338 4 29 0.55321573 3.879670871 2.810020185 Up 5.25E-05 0.000296777 PREDICTED: cucumisin-like [Glycine max] GO:0031410//cytoplasmic vesicle GO:0004175//endopeptidase activity;GO:0005515//protein binding GO:0019538//protein metabolic process;GO:0044092//negative regulation of molecular function Unigene0047238 327 0 54 0.001 7.467231123 12.86635767 Up 6.66E-16 1.07E-14 -- - - - Unigene0000186 253 0 13 0.001 2.323466513 11.18206314 Up 0.000153757 0.000808318 OSJNBa0060N03.9 [Oryza sativa Japonica Group] - GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding GO:0006259//DNA metabolic process Unigene0000231 364 31 2 3.981177484 0.248451829 -4.002157121 Down 4.19E-08 3.34E-07 CXE carboxylesterase [Malus pumila] - GO:0004091//carboxylesterase activity - Unigene0000480 599 44 12 3.4338165 0.905874449 -1.922429928 Down 7.45E-06 4.76E-05 Pentatricopeptide repeat-containing protein [Medicago truncatula] >gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] - - - Unigene0000611 337 0 54 0.001 7.245651565 12.82289971 Up 6.66E-16 1.08E-14 Uncharacterized protein YLR154C-G OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR154C-G PE=2 SV=1 - - - Unigene0071718 624 0 90 0.001 6.521860516 12.67106787 Up 6.66E-16 1.08E-14 -- - - - Unigene0000638 396 22 1 2.597040509 0.114187457 -4.507392429 Down 2.06E-06 1.40E-05 PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max] - - - Unigene0000696 946 102 39 5.040345005 1.864176621 -1.434983933 Down 2.52E-08 2.05E-07 At3g11420 [Arabidopsis thaliana] - - - Unigene0068392 362 0 48 0.001 5.99578779 12.54973361 Up 8.66E-15 1.33E-13 -- - - - Unigene0000703 552 34 10 2.879327521 0.819170886 -1.813495557 Down 0.000160258 0.000839292 Multiple C2 and transmembrane domain-containing protein [Medicago truncatula] >gi|355501922|gb|AES83125.1| Multiple C2 and transmembrane domain-containing protein [Medicago truncatula] - - - Unigene0000706 532 38 9 3.339052083 0.764970106 -2.125963322 Down 9.10E-06 5.75E-05 G-type lectin S-receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] >gi|332190593|gb|AEE28714.1| G-type lectin S-receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] - - - Unigene0002360 245 0 31 0.001 5.721490695 12.48217536 Up 7.89E-10 7.19E-09 -- - - - Unigene0000755 770 67 22 4.067572538 1.291949512 -1.654618382 Down 5.66E-07 4.09E-06 PREDICTED: zinc finger protein ZAT9-like [Glycine max] - - - Unigene0064610 205 0 24 0.001 5.293841902 12.37009939 Up 9.00E-08 6.99E-07 -- - - - Unigene0000761 354 52 17 6.866751177 2.171497061 -1.660937687 Down 1.03E-05 6.46E-05 glycosyltransferase [Panax notoginseng] - - - Unigene0000762 314 30 3 4.46624801 0.432021334 -3.369888905 Down 4.77E-07 3.47E-06 MLO-like protein 6 [Vitis vinifera] - - - Unigene0000964 403 30 6 3.479905397 0.673224311 -2.369888905 Down 2.69E-05 0.0001588 bZIP-like protein [Gossypium hirsutum] - - - Unigene0001049 876 38 10 2.027826151 0.516189873 -1.973960229 Down 2.34E-05 0.000139317 Pentatricopeptide repeat-containing protein [Medicago truncatula] >gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula] >gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] - - - Unigene0011102 208 0 20 0.001 4.347907011 12.08610537 Up 1.35E-06 9.38E-06 -- - - - Unigene0001146 728 99 40 6.357041466 2.484518292 -1.355389335 Down 1.47E-07 1.12E-06 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] >gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] - - - Unigene0004308 290 0 27 0.001 4.209973409 12.03959541 Up 1.18E-08 9.88E-08 - - - - Unigene0001220 334 16 1 2.239364271 0.135383931 -4.04796081 Down 0.000110612 0.000596305 calcium dependent protein kinase 13 [Populus trichocarpa] >gi|222868213|gb|EEF05344.1| calcium dependent protein kinase 13 [Populus trichocarpa] - - - Unigene0018299 634 0 58 0.001 4.136683768 12.01425896 Up 6.66E-16 1.08E-14 -- - - - Unigene0004454 210 0 19 0.001 4.091173454 11.99829899 Up 2.65E-06 1.79E-05 -- - - - Unigene0060256 247 0 22 0.001 4.027534915 11.97568138 Up 3.48E-07 2.57E-06 -- - - - Unigene0002710 429 0 38 0.001 4.00534464 11.96771067 Up 6.92E-12 7.35E-11 -- - - - Unigene0001396 1024 87 31 3.971645935 1.368911348 -1.536707996 Down 6.26E-08 4.92E-07 RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease - GO:0046872//metal ion binding;GO:0003676//nucleic acid binding - Unigene0058899 219 0 19 0.001 3.923043038 11.93775745 Up 2.65E-06 1.79E-05 -- - - - Unigene0001408 619 79 31 5.96606075 2.264564169 -1.397545248 Down 1.58E-06 1.09E-05 Pentatricopeptide repeat-containing protein [Medicago truncatula] >gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] - - - Unigene0001502 750 13 45 0.810276639 2.713093975 1.743452568 Up 3.35E-05 0.000195266 retrofit [Oryza longistaminata] GO:0043231//intracellular membrane-bounded organelle GO:0003676//nucleic acid binding GO:0006259//DNA metabolic process Unigene0001671 605 82 30 6.335920317 2.242226425 -1.498622219 Down 2.53E-07 1.89E-06 homeobox-leucine zipper protein MERISTEM L1 [Arabidopsis thaliana] >gi|79325215|ref|NP_001031692.1| homeobox-leucine zipper protein MERISTEM L1 [Arabidopsis thaliana] >gi|75330714|sp|Q8RWU4.1|ATML1_ARATH RecName: Full=Homeobox-leucine zipper protein MERISTEM L1; AltName: Full=HD-ZIP protein ATML1; AltName: Full=Homeodomain transcription factor ATML1 >gi|110739777|dbj|BAF01795.1| L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20 [Arabidopsis thaliana] >gi|332659098|gb|AEE84498.1| homeobox-leucine zipper protein MERISTEM L1 [Arabidopsis thaliana] >gi|332659099|gb|AEE84499.1| homeobox-leucine zipper protein MERISTEM L1 [Arabidopsis thaliana] GO:0043231//intracellular membrane-bounded organelle GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity "GO:0006351//transcription, DNA-dependent" Unigene0014642 242 0 19 0.001 3.55019184 11.79368127 Up 2.65E-06 1.79E-05 -- - - - Unigene0069018 357 0 27 0.001 3.419866355 11.73972423 Up 1.18E-08 9.88E-08 -- - - - Unigene0062638 256 0 19 0.001 3.356040724 11.71254451 Up 2.65E-06 1.79E-05 -- - - - Unigene0072408 244 0 18 0.001 3.335771281 11.70380466 Up 5.22E-06 3.39E-05 -- - - - Unigene0001733 315 51 9 7.568518056 1.291949512 -2.550461151 Down 8.69E-09 7.35E-08 Protein TRANSPARENT TESTA [Medicago truncatula] >gi|355514463|gb|AES96086.1| Protein TRANSPARENT TESTA [Medicago truncatula] GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle GO:0015291//secondary active transmembrane transporter activity GO:0015893//drug transport;GO:0051707//response to other organism Unigene0004296 259 0 19 0.001 3.317167666 11.69573622 Up 2.65E-06 1.79E-05 -- - - - Unigene0004915 274 0 20 0.001 3.300600943 11.68851301 Up 1.35E-06 9.38E-06 -- - - - Unigene0001896 540 50 17 4.328400849 1.423536962 -1.604354159 Down 2.47E-05 0.000147041 At1g68350 [Arabidopsis thaliana] - - - Unigene0001816 352 0 25 0.001 3.211522224 11.64904156 Up 4.57E-08 3.63E-07 -- - - - Unigene0005261 346 0 24 0.001 3.136524826 11.61495127 Up 9.00E-08 6.99E-07 -- - - - Unigene0064740 267 0 18 0.001 3.048420196 11.57384606 Up 5.22E-06 3.39E-05 -- - - - Unigene0001961 376 58 20 7.210931627 2.405225155 -1.58401371 Down 6.61E-06 4.25E-05 Receptor like kinase [Medicago truncatula] >gi|357478087|ref|XP_003609329.1| Receptor like kinase [Medicago truncatula] >gi|355510361|gb|AES91503.1| Receptor like kinase [Medicago truncatula] >gi|355510384|gb|AES91526.1| Receptor like kinase [Medicago truncatula] - GO:0030246//carbohydrate binding;GO:0004672//protein kinase activity;GO:0032559 GO:0006464//protein modification process;GO:0008037//cell recognition Unigene0002014 829 38 90 2.142793376 4.909096456 1.195964773 Up 8.40E-06 5.33E-05 thioredoxin-like 1-1 [Arabidopsis thaliana] >gi|186478272|ref|NP_001117249.1| thioredoxin-like 1-1 [Arabidopsis thaliana] >gi|227202606|dbj|BAH56776.1| AT1G08570 [Arabidopsis thaliana] >gi|332190188|gb|AEE28309.1| thioredoxin-like 1-1 [Arabidopsis thaliana] >gi|332190189|gb|AEE28310.1| thioredoxin-like 1-1 [Arabidopsis thaliana] GO:0009941//chloroplast envelope;GO:0009532//plastid stroma "GO:0016667//oxidoreductase activity, acting on a sulfur group of donors" - Unigene0070553 389 0 26 0.001 3.022298344 11.56143037 Up 2.33E-08 1.90E-07 -- - - - Unigene0002015 1678 4532 9989 126.2551708 269.1805295 1.092231585 Up 2.42E-11 2.44E-10 Thioredoxin-like protein [Medicago truncatula] >gi|124365591|gb|ABN09825.1| Thioredoxin domain 2; Thioredoxin fold [Medicago truncatula] >gi|355499616|gb|AES80819.1| Thioredoxin-like protein [Medicago truncatula] GO:0009941//chloroplast envelope;GO:0009532//plastid stroma "GO:0016667//oxidoreductase activity, acting on a sulfur group of donors" - Unigene0002017 433 143 56 15.43829624 5.84808555 -1.400477225 Down 8.87E-11 8.57E-10 predicted protein [Populus trichocarpa] >gi|222834016|gb|EEE72493.1| predicted protein [Populus trichocarpa] - - - Unigene0015266 357 0 23 0.001 2.913219487 11.50839869 Up 1.77E-07 1.34E-06 -- - - - Unigene0066710 202 0 13 0.001 2.910084296 11.50684523 Up 0.000153757 0.000808496 -- - - - Unigene0002018 536 203 71 17.70445153 5.989728614 -1.563549608 Down 4.66E-17 7.86E-16 ethphon-induced protein [Hevea brasiliensis] >gi|212960212|gb|ACJ38661.1| ethphon-induced protein [Hevea brasiliensis] - - - Unigene0002030 583 152 361 12.18782647 27.99962621 1.199966703 Up 1.21E-13 1.69E-12 methyl binding domain protein [Populus trichocarpa] >gi|222850588|gb|EEE88135.1| methyl binding domain protein [Populus trichocarpa] GO:0010369//chromocenter;GO:0030874//nucleolar chromatin GO:0005515//protein binding;GO:0016787//hydrolase activity;GO:0000166//nucleotide binding - Unigene0002043 497 138 27 12.97997711 2.45652372 -2.401597765 Down 3.43E-20 6.36E-19 ankyrin repeat-containing protein [Arabidopsis thaliana] >gi|45825143|gb|AAS77479.1| At5g51160 [Arabidopsis thaliana] >gi|332008662|gb|AED96045.1| ankyrin repeat-containing protein [Arabidopsis thaliana] - - - Unigene0052715 272 0 17 0.001 2.826139557 11.46461699 Up 1.03E-05 6.44E-05 -- - - - Unigene0002052 514 229 55 20.82685015 4.838526868 -2.105804885 Down 6.76E-28 1.47E-26 At1g29290 [Arabidopsis thaliana] - - - Unigene0000835 277 0 17 0.001 2.775126208 11.43833767 Up 1.03E-05 6.44E-05 -- - - - Unigene0004862 250 0 15 0.001 2.713093975 11.4057233 Up 3.97E-05 0.000229279 -- - - - Unigene0002058 1462 278 114 8.888912933 3.525908722 -1.334011869 Down 2.68E-18 4.71E-17 transducin/WD40 domain-containing protein [Arabidopsis thaliana] >gi|332659062|gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] GO:0043231//intracellular membrane-bounded organelle - - Unigene0002063 1147 100 49 4.075564879 1.931729218 -1.077107156 Down 1.05E-05 6.60E-05 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] >gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] - - - Unigene0075519 230 0 13 0.001 2.555813165 11.31956666 Up 0.000153757 0.000807724 -- - - - Unigene0002064 601 92 45 7.155905297 3.385724594 -1.07966967 Down 2.31E-05 0.000138042 PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Glycine max] - - - Unigene0072988 232 0 13 0.001 2.533780293 11.30707572 Up 0.000153757 0.000808733 -- - - - Unigene0022124 241 0 13 0.001 2.439157792 11.25216738 Up 0.000153757 0.000807902 -- - - - Unigene0007470 261 0 14 0.001 2.425499084 11.24406592 Up 7.82E-05 0.000430776 -- - - - Unigene0057801 244 0 13 0.001 2.409168147 11.23431937 Up 0.000153757 0.000808021 -- - - - Unigene0002066 463 40 8 4.038594312 0.78130856 -2.369888905 Down 1.12E-06 7.85E-06 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] >gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] GO:0043231//intracellular membrane-bounded organelle - - Unigene0002078 474 53 4 5.226954949 0.381588463 -3.775881265 Down 1.37E-12 1.60E-11 AP2/ERF domain-containing transcription factor [Populus trichocarpa] >gi|148372101|gb|ABQ62982.1| TINY-like protein [Populus trichocarpa] >gi|222835751|gb|EEE74186.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] GO:0043231//intracellular membrane-bounded organelle GO:0001071//nucleic acid binding transcription factor activity "GO:0006351//transcription, DNA-dependent" Unigene0002083 410 116 20 13.22590386 2.205767459 -2.58401371 Down 1.39E-18 2.46E-17 PREDICTED: lachrymatory-factor synthase-like [Glycine max] - - - Unigene0070080 329 0 17 0.001 2.336504436 11.19013606 Up 1.03E-05 6.44E-05 -- - - - Unigene0002087 645 19 79 1.377035433 5.53835721 2.007892425 Up 5.59E-09 4.80E-08 PREDICTED: amino acid permease 1-like [Brachypodium distachyon] GO:0031224//intrinsic to membrane - - Unigene0038242 292 0 15 0.001 2.322854431 11.18168303 Up 3.97E-05 0.000229168 -- - - - Unigene0002096 272 55 22 9.452463618 3.657357074 -1.369888905 Down 8.25E-05 0.000452891 Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana] >gi|28372910|gb|AAO39937.1| At1g58170 [Arabidopsis thaliana] >gi|332195384|gb|AEE33505.1| Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana] GO:0044464//cell part - GO:0006950//response to stress;GO:0009699//phenylpropanoid biosynthetic process Unigene0005727 536 0 27 0.001 2.277784121 11.15341531 Up 1.18E-08 9.88E-08 -- - - - Unigene0002108 1398 560 192 18.7254423 6.210229413 -1.592281326 Down 1.90E-45 5.39E-44 At2g46890 [Arabidopsis thaliana] - - - Unigene0002115 396 97 20 11.4505877 2.283749137 -2.325945558 Down 4.10E-14 6.06E-13 PREDICTED: xyloglucan glycosyltransferase 4-like [Glycine max] GO:0016020//membrane GO:0016759//cellulose synthase activity - Unigene0002118 685 112 46 7.643260827 3.036552867 -1.331753776 Down 3.42E-08 2.75E-07 PREDICTED: dermal papilla-derived protein 6 homolog [Glycine max] - - - Unigene0002119 1121 315 950 13.13578919 38.32053637 1.544614875 Up 5.11E-13 6.48E-12 protein kinase (PK) [Fagus sylvatica] GO:0044444//cytoplasmic part;GO:0016020//membrane GO:0004672//protein kinase activity;GO:0032559 GO:0006464//protein modification process Unigene0064612 271 0 13 0.001 2.169140324 11.08290767 Up 0.000153757 0.000807961 -- - - - Unigene0002120 644 99 47 7.186220788 3.300088427 -1.122728579 Down 5.81E-06 3.75E-05 PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 86A2-like [Glycine max] - "GO:0016712//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;GO:0016713;GO:0005506//iron ion binding" GO:0032787//monocarboxylic acid metabolic process Unigene0062869 435 0 20 0.001 2.078999214 11.0216735 Up 1.35E-06 9.38E-06 -- - - - Unigene0002135 360 332 57 43.11087245 7.159553545 -2.590110227 Down 1.49E-50 4.48E-49 PREDICTED: PHD finger protein rhinoceros-like [Glycine max] - GO:0046872//metal ion binding - Unigene0060879 294 0 13 0.001 1.999445673 10.96538437 Up 0.000153757 0.000807665 -- - - - Unigene0002136 600 301 39 23.4512758 2.939185139 -2.996178268 Down 1.88E-53 5.81E-52 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] >gi|332642041|gb|AEE75562.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] - GO:0046914//transition metal ion binding - Unigene0002139 323 12 42 1.736720588 5.879770224 1.759394112 Up 5.60E-05 0.000315727 catechol o-methyltransferase related [Populus trichocarpa] >gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] - GO:0005515//protein binding;GO:0008171//O-methyltransferase activity GO:0006730//one-carbon metabolic process;GO:0009699//phenylpropanoid biosynthetic process Unigene0011087 553 0 24 0.001 1.962454955 10.93844382 Up 9.00E-08 6.99E-07 -- - - - Unigene0002159 243 69 8 13.2737626 1.488666104 -3.156485267 Down 6.13E-14 8.91E-13 PREDICTED: ankyrin repeat and KH domain-containing protein 1-like [Glycine max] - - - Unigene0066033 304 0 13 0.001 1.933674434 10.9171292 Up 0.000153757 0.000808139 -- - - - Unigene0002160 502 33 3 3.072992156 0.270228484 -3.507392429 Down 7.31E-08 5.71E-07 PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] - - - Unigene0058094 307 0 13 0.001 1.914778592 10.90296187 Up 0.000153757 0.000807487 -- - - - Unigene0002169 504 57 23 5.286832465 2.06353047 -1.357288868 Down 6.87E-05 0.000382897 "PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Glycine max]" GO:0043231//intracellular membrane-bounded organelle GO:0005488//binding - Unigene0002177 1080 134 52 5.800057137 2.177174177 -1.413610283 Down 2.60E-10 2.45E-09 "pentatricopeptide repeat-containing protein [Arabidopsis thaliana] >gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g35130, chloroplastic; Flags: Precursor >gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]" - - - Unigene0002179 988 14 46 0.662403045 2.105302342 1.668246224 Up 4.74E-05 0.000270151 Retrotransposon gag protein [Asparagus officinalis] - GO:0003676//nucleic acid binding - Unigene0002188 409 55 12 6.286234973 1.32669632 -2.244358023 Down 2.94E-08 2.37E-07 p-hydroxyphenylpyruvate dioxygenase [Mangifera indica] GO:0009536//plastid "GO:0043169//cation binding;GO:0016702//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;GO:0005515//protein binding" GO:0006558//L-phenylalanine metabolic process;GO:0045426//quinone cofactor biosynthetic process;GO:0042360//vitamin E metabolic process;GO:0006570//tyrosine metabolic process;GO:0016109 Unigene0002212 467 16 92 1.601600999 8.908088711 2.475601146 Up 3.07E-08 2.48E-07 f-box family protein [Populus trichocarpa] >gi|222859891|gb|EEE97438.1| f-box family protein [Populus trichocarpa] - GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity "GO:0006351//transcription, DNA-dependent" Unigene0002215 1100 442 135 18.78368572 5.549510403 -1.759047773 Down 1.71E-41 4.64E-40 binding protein [Arabidopsis lyrata subsp. lyrata] >gi|297316038|gb|EFH46461.1| binding protein [Arabidopsis lyrata subsp. lyrata] - - - Unigene0002234 1508 281 120 8.710763193 3.598267871 -1.275496535 Down 2.43E-17 4.14E-16 "PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max]" - - - Unigene0008580 615 0 25 0.001 1.838139549 10.84403058 Up 4.57E-08 3.63E-07 -- - - - Unigene0002251 476 51 14 5.008578125 1.329948027 -1.91303123 Down 1.47E-06 1.02E-05 RPP13-like protein [Arabidopsis arenosa] - - - Unigene0002252 228 42 5 8.611239583 0.991627915 -3.118350138 Down 7.20E-09 6.13E-08 cc-nbs-lrr resistance protein [Populus trichocarpa] >gi|222837129|gb|EEE75508.1| cc-nbs-lrr resistance protein [Populus trichocarpa] - - - Unigene0002255 377 36 11 4.463878647 1.319364886 -1.758454193 Down 0.000141615 0.00074828 GPI-anchored protein [Arabidopsis thaliana] >gi|28416735|gb|AAO42898.1| At5g63500 [Arabidopsis thaliana] GO:0031224//intrinsic to membrane - - Unigene0002261 385 362 26 43.95406742 3.053698846 -3.847366979 Down 1.37E-79 5.21E-78 transferase family protein [Arabidopsis lyrata subsp. lyrata] >gi|297321137|gb|EFH51558.1| transferase family protein [Arabidopsis lyrata subsp. lyrata] - "GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups" - Unigene0002278 1811 159 506 4.104213107 12.63413907 1.622149809 Up 9.75E-14 1.39E-12 PREDICTED: leucine-rich repeat protein lrrA-like [Glycine max] - GO:0016791//phosphatase activity - Unigene0063834 497 0 18 0.001 1.63768248 10.67743995 Up 5.22E-06 3.39E-05 -- - - - Unigene0066540 447 0 16 0.001 1.618549724 10.66048597 Up 2.02E-05 0.000121501 -- - - - Unigene0063115 366 0 13 0.001 1.606112098 10.64935687 Up 0.000153757 0.000808793 -- - - - Unigene0002281 625 116 42 8.676192933 3.038665252 -1.513624383 Down 6.15E-10 5.66E-09 Os05g0396900 [Oryza sativa Japonica Group] >gi|113579016|dbj|BAF17379.1| Os05g0396900 [Oryza sativa Japonica Group] - - - Unigene0042638 399 0 14 0.001 1.586604664 10.63172698 Up 7.82E-05 0.000430544 -- - - - Unigene0004135 400 0 14 0.001 1.582638152 10.62811573 Up 7.82E-05 0.000430676 -- - - - Unigene0002282 774 154 67 9.301028801 3.9142398 -1.24865816 Down 7.24E-10 6.62E-09 PREDICTED: tubulin-specific chaperone D-like [Glycine max] - GO:0008092//cytoskeletal protein binding GO:0043623//cellular protein complex assembly;GO:0003006//developmental process involved in reproduction;GO:0044267//cellular protein metabolic process Unigene0002300 494 56 152 5.299224359 13.91330244 1.392611781 Up 6.65E-11 6.48E-10 Os06g0283200 [Oryza sativa Japonica Group] >gi|55297405|dbj|BAD69258.1| 2x PHD domain containing protein-like [Oryza sativa Japonica Group] >gi|113595435|dbj|BAF19309.1| Os06g0283200 [Oryza sativa Japonica Group] - - - Unigene0031258 438 0 14 0.001 1.445331646 10.49718486 Up 7.82E-05 0.000430643 -- - - - Unigene0002336 1352 505 148 17.46087147 4.949924905 -1.818647022 Down 2.56E-49 7.55E-48 expressed protein [Oryza sativa Japonica Group] - - - Unigene0002342 1833 85 21 2.167742487 0.518048495 -2.065034324 Down 5.30E-11 5.20E-10 PREDICTED: PPPDE peptidase domain-containing protein 2-like [Glycine max] GO:0031410//cytoplasmic vesicle - - Unigene0037536 748 0 22 0.001 1.329948027 10.37715415 Up 3.48E-07 2.57E-06 -- - - - Unigene0002361 651 9 47 0.646268145 3.264603605 2.33670304 Up 2.80E-06 1.88E-05 C2H2-type zinc finger protein 1 [Populus trichocarpa] - GO:0005488//binding - Unigene0006238 461 0 13 0.001 1.275134551 10.31643377 Up 0.000153757 0.000807606 -- - - - Unigene0002362 283 192 33 31.71509541 5.272797478 -2.588529192 Down 7.19E-30 1.63E-28 tir-nbs-lrr resistance protein [Populus trichocarpa] >gi|222835789|gb|EEE74224.1| tir-nbs-lrr resistance protein [Populus trichocarpa] GO:0044425//membrane part GO:0004872//receptor activity;GO:0032559 GO:0006952//defense response;GO:0012501//programmed cell death;GO:0023052//signaling Unigene0002390 981 445 1378 21.20519315 63.51755857 1.582737837 Up 1.05E-13 1.49E-12 Expressed protein [Arabidopsis thaliana] >gi|15450484|gb|AAK96535.1| At2g23090/F21P24.15 [Arabidopsis thaliana] >gi|15912199|gb|AAL08233.1| At2g23090/F21P24.15 [Arabidopsis thaliana] >gi|23505759|gb|AAN28739.1| At2g23090/F21P24.15 [Arabidopsis thaliana] - - - Unigene0002395 215 10 56 2.174266473 11.77777229 2.437466017 Up 1.37E-06 9.54E-06 PREDICTED: early nodulin-75-like [Glycine max] - - - Unigene0072021 556 0 15 0.001 1.219916356 10.25256652 Up 3.97E-05 0.000229334 -- - - - Unigene0002401 759 29 128 1.786106911 7.625736249 2.094058195 Up 6.58E-12 7.01E-11 PREDICTED: cell division cycle protein 48 homolog [Glycine max] - - - Unigene0002403 384 60 4 7.304176432 0.47102326 -3.954851406 Down 1.50E-14 2.29E-13 (E)-beta-ocimene synthase [Vitis vinifera] - GO:0046872//metal ion binding;GO:0003824//catalytic activity - Unigene0002410 1046 109 350 4.871313078 15.13038386 1.635065977 Up 0 0 PREDICTED: cysteine-rich receptor-like protein kinase 29-like isoform 2 [Glycine max] - GO:0004672//protein kinase activity - Unigene0002413 615 181 82 13.75798045 6.029097722 -1.190254693 Down 1.25E-10 1.20E-09 PREDICTED: lamin-like protein-like [Glycine max] - GO:0046914//transition metal ion binding GO:0006091//generation of precursor metabolites and energy Unigene0002421 500 13 196 1.215414958 17.7255473 3.866309316 Up 2.10E-07 1.58E-06 proline transporter [Populus trichocarpa] >gi|222850052|gb|EEE87599.1| proline transporter [Populus trichocarpa] GO:0031224//intrinsic to membrane - - Unigene0002425 228 474 232 97.18398958 46.01153525 -1.078723064 Down 5.92E-22 1.15E-20 ubiquitin extension protein [Rosa multiflora] GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex GO:0043169//cation binding;GO:0005198//structural molecule activity GO:0010467//gene expression Unigene0002448 1042 53 113 2.377712712 4.903704721 1.044297698 Up 7.45E-06 4.76E-05 PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max] GO:0009534//chloroplast thylakoid GO:0016859//cis-trans isomerase activity GO:0044267//cellular protein metabolic process Unigene0002478 747 160 435 10.0126863 26.3319027 1.394982686 Up 1.03E-13 1.46E-12 ERF transcription factor 4 [Vitis pseudoreticulata] - - "GO:0006351//transcription, DNA-dependent" Unigene0002490 938 52 4 2.591503109 0.192828285 -3.748400528 Down 2.59E-12 2.94E-11 PREDICTED: protein FANTASTIC FOUR 4-like [Glycine max] - - - Unigene0002494 1089 59 143 2.532651075 5.937747756 1.229267477 Up 8.95E-09 7.56E-08 uncharacterized protein [Arabidopsis thaliana] >gi|330250991|gb|AEC06085.1| uncharacterized protein [Arabidopsis thaliana] GO:0043231//intracellular membrane-bounded organelle - - Unigene0002792 471 3 226 0.297749867 21.69707142 6.187255651 Up 7.00E-05 0.000389532 -- - - - Unigene0009431 419 2 130 0.223134745 14.02952334 5.974407003 Up 0.000111848 0.000601834 -- - - - Unigene0080325 708 3 162 0.198079361 10.34654482 5.706926692 Up 7.00E-05 0.000389411 -- - - - Unigene0002505 1017 156 337 7.170589725 14.98381956 1.063241752 Up 1.82E-13 2.48E-12 multidrug resistance protein ABC transporter family protein [Populus trichocarpa] >gi|222843232|gb|EEE80779.1| multidrug resistance protein ABC transporter family protein [Populus trichocarpa] - - - Unigene0002506 1345 4656 875 161.8236216 29.41706602 -2.459696946 Down 0 0 Fibrillarin [Medicago truncatula] >gi|358345300|ref|XP_003636719.1| Fibrillarin [Medicago truncatula] >gi|355481740|gb|AES62943.1| Fibrillarin [Medicago truncatula] >gi|355502654|gb|AES83857.1| Fibrillarin [Medicago truncatula] - - - Unigene0049913 356 13 539 1.707043481 68.46243691 5.325740934 Up 2.10E-07 1.58E-06 -- - - - Unigene0002510 765 89 45 5.438508361 2.659896054 -1.031841145 Down 6.04E-05 0.000338977 PREDICTED: hypothetical protein [Vitis vinifera] - - - Unigene0025975 513 5 177 0.455621142 15.60161253 5.097716645 Up 2.54E-05 0.000150833 -- - - - Unigene0040688 389 2 68 0.240343081 7.904472592 5.039502031 Up 0.000111848 0.000601788 -- - - - Unigene0002551 1196 80 23 3.126871516 0.869581402 -1.846326949 Down 3.47E-09 3.02E-08 OJ991113_30.21 [Oryza sativa Japonica Group] - - - Unigene0002560 385 72 23 8.742245454 2.701348979 -1.694323856 Down 1.32E-07 1.01E-06 Mad3/BUB1 homology region 1 [Arabidopsis thaliana] >gi|50253522|gb|AAT71963.1| At5g05510 [Arabidopsis thaliana] >gi|56381969|gb|AAV85703.1| At5g05510 [Arabidopsis thaliana] >gi|332003499|gb|AED90882.1| Mad3/BUB1 homology region 1 [Arabidopsis thaliana] - - - Unigene0020494 412 5 158 0.567314674 17.34097282 4.933891843 Up 2.54E-05 0.000150984 -- - - - Unigene0002566 309 27 5 4.084665655 0.731686617 -2.480920217 Down 4.47E-05 0.000255623 PREDICTED: protein PRD1-like [Glycine max] GO:0009536//plastid GO:0042802//identical protein binding GO:0007127//meiosis I Unigene0002588 1565 2334 10 69.7168472 0.288934396 -7.914621561 Down 0 0 tryptophan synthase beta chain [Arabidopsis thaliana] >gi|332006400|gb|AED93783.1| tryptophan synthase beta chain [Arabidopsis thaliana] - "GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;GO:0048037//cofactor binding;GO:0016836//hydro-lyase activity" GO:0006568//tryptophan metabolic process Unigene0002596 585 99 48 7.910984936 3.710213983 -1.09235493 Down 9.26E-06 5.85E-05 PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] GO:0016020//membrane GO:0060089 GO:0023052//signaling;GO:0009314//response to radiation Unigene0002605 749 29 70 1.809953466 4.226003076 1.223341212 Up 6.51E-05 0.00036416 PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] GO:0044464//cell part GO:0015291//secondary active transmembrane transporter activity GO:0003006//developmental process involved in reproduction;GO:0015893//drug transport Unigene0002609 1555 75 33 2.254665394 0.959615232 -1.232385381 Down 2.20E-05 0.000131527 PREDICTED: hypothetical protein [Vitis vinifera] - - - Unigene0002611 3452 2213 960 29.96828263 12.57517485 -1.25285795 Down 8.12E-122 3.79E-120 Os08g0430000 [Oryza sativa Japonica Group] >gi|113623821|dbj|BAF23766.1| Os08g0430000 [Oryza sativa Japonica Group] - - - Unigene0002618 719 149 67 9.687430662 4.213660091 -1.20104014 Down 4.19E-09 3.64E-08 PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] GO:0005618//cell wall GO:0030234//enzyme regulator activity;GO:0004091//carboxylesterase activity GO:0071555 Unigene0060129 221 2 53 0.423047323 10.8441916 4.679959644 Up 0.000111848 0.000601653 -- - - - Unigene0025974 284 5 132 0.823005795 21.01692516 4.674505214 Up 2.54E-05 0.000150909 -- - - - Unigene0011960 343 3 79 0.40886352 10.41469504 4.670857437 Up 7.00E-05 0.000389381 -- - - - Unigene0002635 1057 81 38 3.582294288 1.625631836 -1.1398833 Down 3.37E-05 0.000196204 PREDICTED: probable polyol transporter 6-like [Glycine max] GO:0016020//membrane GO:0016491//oxidoreductase activity GO:0006810//transport Unigene0002661 657 76 10 5.407536403 0.688253165 -2.973960229 Down 1.91E-14 2.89E-13 Os09g0483500 [Oryza sativa Japonica Group] >gi|113631743|dbj|BAF25424.1| Os09g0483500 [Oryza sativa Japonica Group] - GO:0046872//metal ion binding - Unigene0002665 578 71 22 5.742245278 1.721109211 -1.738276311 Down 9.59E-08 7.43E-07 PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Glycine max] - - - Unigene0059055 562 3 75 0.2495377 6.034461688 4.59589538 Up 7.00E-05 0.000389563 -- - - - Unigene0023522 613 2 49 0.152517877 3.614508014 4.566749034 Up 0.000111848 0.000601969 -- - - - Unigene0002690 860 139 66 7.555575993 3.470236479 -1.122507764 Down 7.61E-08 5.94E-07 PREDICTED: uncharacterized membrane protein C2G11.09-like [Glycine max] - - - Unigene0002712 748 95 30 5.937084587 1.813565491 -1.710925823 Down 9.85E-10 8.92E-09 cc-nbs-lrr resistance protein [Populus trichocarpa] >gi|222837739|gb|EEE76104.1| cc-nbs-lrr resistance protein [Populus trichocarpa] - - - Unigene0035335 336 8 182 1.113017361 24.4932095 4.45983383 Up 4.58E-06 3.01E-05 -- - - - Unigene0002713 728 160 71 10.27400641 4.410019968 -1.220141786 Down 6.96E-10 6.37E-09 CNL-B18 [Phaseolus vulgaris] - - - Unigene0078869 447 6 132 0.627472875 13.35303522 4.411470808 Up 1.46E-05 9.00E-05 -- - - - Unigene0002729 528 163 84 14.43128192 7.193809782 -1.004371542 Down 1.05E-07 8.07E-07 PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [Brachypodium distachyon] GO:0019866//organelle inner membrane;GO:0005758//mitochondrial intermembrane space GO:0043169//cation binding;GO:0008320//protein transmembrane transporter activity GO:0006612//protein targeting to membrane Unigene0002756 633 206 65 15.21299559 4.643262464 -1.712093524 Down 1.76E-19 3.20E-18 PREDICTED: similar to Protein kinase [Vitis vinifera] GO:0031224//intrinsic to membrane "GO:0004871//signal transducer activity;GO:0016301//kinase activity;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;GO:0032559" GO:0006464//protein modification process Unigene0002757 442 41 88 4.336235058 9.002725105 1.053918804 Up 6.92E-05 0.000385787 PREDICTED: cytochrome P450 86B1-like [Glycine max] - "GO:0016712//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;GO:0005506//iron ion binding" GO:0008152//metabolic process Unigene0002761 501 352 154 32.84400931 13.8994169 -1.240605888 Down 1.69E-20 3.16E-19 "PREDICTED: fructose-1,6-bisphosphatase, chloroplastic-like [Glycine max]" GO:0009532//plastid stroma;GO:0009526//plastid envelope;GO:0005576//extracellular region "GO:0043169//cation binding;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;GO:0019203//carbohydrate phosphatase activity" GO:0005984//disaccharide metabolic process;GO:0009767//photosynthetic electron transport chain;GO:0015977//carbon fixation;GO:0006000//fructose metabolic process;GO:0006950//response to stress Unigene0002779 239 27 75 5.281011245 14.18982204 1.425970378 Up 3.27E-06 2.19E-05 hypothetical protein NitaMp040 [Nicotiana tabacum] >gi|56806549|dbj|BAD83450.1| hypothetical protein [Nicotiana tabacum] - - - Unigene0002780 944 83 219 4.110146738 10.49024683 1.351786818 Up 1.66E-13 2.28E-12 NADH dehydrogenase subunit F [Medicago truncatula] >gi|355522519|gb|AET02973.1| NADH dehydrogenase subunit F [Medicago truncatula] - - - Unigene0002793 1077 102 31 4.427266829 1.301546166 -1.766189842 Down 9.31E-11 8.98E-10 PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Glycine max] - - - Unigene0002796 2039 28 70 0.641936448 1.552366996 1.273967285 Up 3.75E-05 0.000217424 PREDICTED: guanylate kinase-like [Glycine max] - - - Unigene0002830 900 660 48 34.28093472 2.411639089 -3.829320524 Down 2.92E-143 1.47E-141 HXXXD-type acyl-transferase-like protein [Arabidopsis thaliana] >gi|332643586|gb|AEE77107.1| HXXXD-type acyl-transferase-like protein [Arabidopsis thaliana] - - - Unigene0062546 376 5 102 0.621632037 12.26664829 4.302536437 Up 2.54E-05 0.000151021 -- - - - Unigene0002845 836 1113 435 62.23577699 23.52862598 -1.403327097 Down 9.69E-74 3.53E-72 COSII [Medicago truncatula] >gi|355516021|gb|AES97644.1| COSII [Medicago truncatula] GO:0031410//cytoplasmic vesicle - - Unigene0013345 706 3 58 0.198640492 3.714812336 4.225057684 Up 7.00E-05 0.000389351 -- - - - Unigene0002853 927 238 108 12.00185711 5.26814364 -1.187891071 Down 1.71E-13 2.34E-12 PREDICTED: 26S protease regulatory subunit 6B homolog [Glycine max] GO:0005838//proteasome regulatory particle;GO:0043231//intracellular membrane-bounded organelle;GO:0030312//external encapsulating structure "GO:0042623//ATPase activity, coupled;GO:0032559" GO:0019941//modification-dependent protein catabolic process Unigene0002875 793 169 74 9.962417691 4.219608116 -1.239386881 Down 1.38E-10 1.32E-09 RNA polymerase IV subunit [Populus trichocarpa] >gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa] GO:0044451//nucleoplasm part GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity GO:0006342//chromatin silencing;GO:0007154//cell communication;GO:0016246//RNA interference Unigene0012325 364 2 37 0.25685016 4.59635884 4.161492555 Up 0.000111851 0.000601442 -- - - - Unigene0011763 480 2 37 0.194778038 3.48557212 4.161492555 Up 0.000111851 0.000601397 -- - - - Unigene0073992 420 18 327 2.00343125 35.2056242 4.135261014 Up 8.42E-09 7.13E-08 -- - - - Unigene0002876 1104 253 89 10.7127921 3.645310443 -1.555220954 Down 9.70E-21 1.82E-19 RNA polymerase IV subunit [Populus trichocarpa] >gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa] - GO:0034062//RNA polymerase activity;GO:0003676//nucleic acid binding GO:0010467//gene expression Unigene0002888 758 53 17 3.268570773 1.014129234 -1.688418424 Down 6.62E-06 4.25E-05 PREDICTED: LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B-like [Glycine max] - GO:0005488//binding;GO:0003824//catalytic activity GO:0044238//primary metabolic process Unigene0040687 294 4 71 0.636009921 10.92004945 4.101786309 Up 4.30E-05 0.000246907 -- - - - Unigene0078783 224 3 53 0.626072266 10.69895689 4.094997144 Up 7.00E-05 0.000389442 -- - - - Unigene0002899 728 380 36 24.40076522 2.236066463 -3.447891417 Down 2.38E-76 8.85E-75 wax synthase isoform 3 [Vitis vinifera] - - - Unigene0015663 801 14 246 0.817046452 13.88724756 4.087198773 Up 1.11E-07 8.55E-07 -- - - - Unigene0002900 391 81 4 9.684105019 0.462590618 -4.387810813 Down 1.56E-20 2.90E-19 PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Glycine max] GO:0016020//membrane GO:0005488//binding;GO:0016740//transferase activity GO:0006706//steroid catabolic process;GO:0034433 Unigene0002908 1212 289 137 11.14670357 5.111301905 -1.12485441 Down 7.49E-15 1.16E-13 "PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like [Brachypodium distachyon]" - - - Unigene0002909 266 12 73 2.108875 12.40951505 2.556901248 Up 3.94E-07 2.89E-06 peroxidase [Populus trichocarpa] GO:0044464//cell part GO:0005506//iron ion binding;GO:0003824//catalytic activity;GO:0016209//antioxidant activity GO:0006952//defense response;GO:0008152//metabolic process Unigene0020222 362 2 34 0.258269222 4.247016351 4.039502031 Up 0.000111866 0.000601387 -- - - - Unigene0002910 699 19 94 1.270655013 6.080849634 2.258700528 Up 4.39E-09 3.80E-08 peroxidase [Populus trichocarpa] GO:0044464//cell part GO:0005506//iron ion binding;GO:0003824//catalytic activity;GO:0016209//antioxidant activity GO:0006952//defense response;GO:0008152//metabolic process Unigene0004124 343 2 34 0.27257568 4.482273817 4.039502031 Up 0.000111866 0.000601297 -- - - - Unigene0002921 1370 193 875 6.585488123 28.88025825 2.132721359 Up 1.31E-13 1.83E-12 MYB transcription factor MYB75 [Glycine max] >gi|110931672|gb|ABH02835.1| MYB transcription factor MYB75 [Glycine max] - - - Unigene0002925 2331 4040 468 81.01964214 9.078564137 -3.157735668 Down 0 0 PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] - - - Unigene0002374 409 6 100 0.685771088 11.05580267 4.010932879 Up 1.46E-05 9.00E-05 -- - - - Unigene0065983 623 3 50 0.225104635 3.629071662 4.010932879 Up 7.00E-05 0.000389472 -- - - - Unigene0002926 2004 392 46 9.144070775 1.03794347 -3.139108698 Down 2.64E-72 9.50E-71 PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] - - - Unigene0002934 980 30 77 1.431022321 3.552861158 1.311935135 Up 9.62E-06 6.06E-05 PREDICTED: similar to GTP1/OBG family member [Vitis vinifera] - - - Unigene0002950 1734 64 408 1.725369473 10.63958422 2.624464532 Up 0 0 Proline-rich protein [Medicago truncatula] >gi|355483329|gb|AES64532.1| Proline-rich protein [Medicago truncatula] - - - Unigene0002953 572 34 86 2.778651734 6.798545508 1.290841103 Up 3.80E-06 2.52E-05 PREDICTED: UDP-glycosyltransferase 71D1-like [Glycine max] >gi|222142539|gb|ACM45956.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Glycine max] - "GO:0016757//transferase activity, transferring glycosyl groups" - Unigene0054463 316 11 175 1.62725956 25.04174291 3.943818683 Up 7.36E-07 5.26E-06 -- - - - Unigene0002978 776 3 29 0.180721891 1.689856642 3.225057684 Up 7.22E-05 0.000399994 polyprotein [Citrus sinensis] GO:0043229//intracellular organelle GO:0003676//nucleic acid binding GO:0006259//DNA metabolic process Unigene0002981 514 99 26 9.003747446 2.28730361 -1.976877712 Down 5.64E-12 6.08E-11 PREDICTED: uncharacterized protein LOC100806465 [Glycine max] - - - Unigene0018263 340 2 31 0.27498076 4.122838883 3.9062355 Up 0.000111962 0.000601543 -- - - - Unigene0002994 260 86 2 15.46237965 0.347832561 -5.474225565 Down 3.11E-24 6.30E-23 5-enol-pyruvylshikimate-phosphate synthase [Helianthus salicifolius] GO:0009536//plastid "GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups" GO:0008652//cellular amino acid biosynthetic process;GO:0006950//response to stress Unigene0002961 381 4 62 0.490779309 7.358347613 3.9062355 Up 4.30E-05 0.000247026 -- - - - Unigene0066287 318 2 31 0.294004586 4.408066731 3.9062355 Up 0.000111962 0.000601678 -- - - - Unigene0002366 483 2 31 0.193568237 2.902205425 3.9062355 Up 0.000111962 0.000601633 -- - - - Unigene0003010 605 390 123 30.13425517 9.193128344 -1.712776619 Down 1.63E-35 4.06E-34 PREDICTED: arabinogalactan peptide 22-like [Glycine max] - - - Unigene0053591 215 8 123 1.739413178 25.86903557 3.894553695 Up 4.58E-06 3.00E-05 -- - - - Unigene0073180 405 6 92 0.692544136 10.27179612 3.890638645 Up 1.46E-05 9.00E-05 -- - - - Unigene0016035 633 6 91 0.443096959 6.500567449 3.874871329 Up 1.46E-05 9.00E-05 -- - - - Unigene0003013 635 38 10 2.79744206 0.712098156 -1.973960229 Down 2.34E-05 0.000139329 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] >gi|222841931|gb|EEE79478.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] - "GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0048588//developmental cell growth;GO:0009685//gibberellin metabolic process Unigene0003020 1035 295 45 13.32394696 1.966010127 -2.760678858 Down 2.90E-48 8.48E-47 PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Glycine max] - GO:0004674//protein serine/threonine kinase activity;GO:0000166//nucleotide binding - Unigene0003027 717 323 735 21.05884731 46.35341868 1.138249275 Up 1.80E-13 2.45E-12 lipid-associated family protein [Arabidopsis lyrata subsp. lyrata] >gi|297312716|gb|EFH43139.1| lipid-associated family protein [Arabidopsis lyrata subsp. lyrata] GO:0009534//chloroplast thylakoid;GO:0031090//organelle membrane - - Unigene0007167 421 3 45 0.333112084 4.833302806 3.858929785 Up 7.00E-05 0.000389201 -- - - - Unigene0003039 716 294 139 19.194886 8.778399965 -1.128692082 Down 3.70E-15 5.81E-14 PREDICTED: kinesin-4-like [Glycine max] GO:0043229//intracellular organelle GO:0003774//motor activity;GO:0000166//nucleotide binding GO:0009987//cellular process Unigene0003071 486 1187 256 114.1735957 23.81865767 -2.26106503 Down 2.31E-150 1.18E-148 pherophorin-dz1 protein [Volvox carteri f. nagariensis] - - - Unigene0008896 285 3 44 0.492070833 6.98106052 3.826508308 Up 7.00E-05 0.000389231 -- - - - Unigene0065764 465 2 29 0.201061201 2.820061838 3.810020185 Up 0.00011224 0.000602853 -- - - - Unigene0003077 1418 785 405 25.87883103 12.91493958 -1.002731556 Down 1.69E-31 3.94E-30 ribosomal protein S9 family protein [Arabidopsis lyrata subsp. lyrata] >gi|297323483|gb|EFH53904.1| ribosomal protein S9 family protein [Arabidopsis lyrata subsp. lyrata] GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex GO:0005198//structural molecule activity GO:0010467//gene expression Unigene0003093 382 26 90 3.181714551 10.65351037 1.743452568 Up 3.61E-09 3.14E-08 Protein kinase 2B [Medicago truncatula] >gi|355518485|gb|AET00109.1| Protein kinase 2B [Medicago truncatula] - GO:0004672//protein kinase activity;GO:0032559 GO:0006464//protein modification process Unigene0002091 279 2 29 0.335102001 4.700103063 3.810020185 Up 0.00011224 0.000602763 -- - - - Unigene0003104 983 49 8 2.330203183 0.368001896 -2.662670654 Down 7.71E-09 6.55E-08 remorin-like protein [Arabidopsis thaliana] >gi|50253498|gb|AAT71951.1| At1g53860 [Arabidopsis thaliana] >gi|53850525|gb|AAU95439.1| At1g53860 [Arabidopsis thaliana] >gi|332194890|gb|AEE33011.1| remorin-like protein [Arabidopsis thaliana] - - - Unigene0003133 1956 252 760 6.022584739 17.56945655 1.544614875 Up 1.72E-13 2.34E-12 PREDICTED: probable serine/threonine-protein kinase WNK5-like [Glycine max] - GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0032559 GO:0009648//photoperiodism;GO:0006464//protein modification process Unigene0003134 670 77 33 5.372385292 2.227166696 -1.270353232 Down 1.06E-05 6.64E-05 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] >gi|330251504|gb|AEC06598.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] - - - Unigene0003158 443 133 35 14.03457106 3.572546618 -1.973960229 Down 1.39E-15 2.21E-14 Histone 2A domain-containing protein [Arabidopsis thaliana] >gi|332008629|gb|AED96012.1| Histone 2A domain-containing protein [Arabidopsis thaliana] - GO:0003676//nucleic acid binding "GO:0006351//transcription, DNA-dependent" Unigene0003167 331 38 12 5.366693983 1.639331707 -1.710925823 Down 0.000123982 0.000660568 40S ribosomal protein s24 [Cucumis melo subsp. melo] GO:0031090//organelle membrane;GO:0015935//small ribosomal subunit;GO:0009536//plastid;GO:0031981//nuclear lumen GO:0005488//binding;GO:0005198//structural molecule activity GO:0010467//gene expression;GO:0022613//ribonucleoprotein complex biogenesis Unigene0005491 405 5 71 0.577120113 7.927147005 3.779858214 Up 2.54E-05 0.000150996 -- - - - Unigene0003173 1588 576 259 16.95599244 7.375014058 -1.201077524 Down 5.44E-31 1.26E-29 Purple acid phosphatase [Medicago truncatula] >gi|355490686|gb|AES71889.1| Purple acid phosphatase [Medicago truncatula] GO:0044464//cell part GO:0016791//phosphatase activity;GO:0043169//cation binding GO:0032501//multicellular organismal process;GO:0009856//pollination Unigene0049214 563 294 4119 24.41125821 330.8239811 3.760445256 Up 0 0 -- - - - Unigene0058705 465 2 28 0.201061201 2.722818326 3.759394112 Up 0.000112572 0.000604455 -- - - - Unigene0080953 539 4 56 0.346914502 4.697998225 3.759394112 Up 4.30E-05 0.000246967 -- - - - Unigene0003175 734 131 66 8.343081091 4.065944649 -1.036989692 Down 9.95E-07 7.02E-06 Mitochondrial inner membrane protease subunit [Medicago truncatula] >gi|355521937|gb|AET02391.1| Mitochondrial inner membrane protease subunit [Medicago truncatula] GO:0031224//intrinsic to membrane GO:0070011 GO:0019538//protein metabolic process Unigene0003185 650 21 68 1.510278942 4.730522828 1.647184608 Up 8.64E-07 6.13E-06 At3g11690 [Arabidopsis thaliana] - - - Unigene0003186 935 127 347 6.349555726 16.78152601 1.402146356 Up 1.52E-13 2.10E-12 PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max] - GO:0003824//catalytic activity - Unigene0003188 1158 30 86 1.21105516 3.358176192 1.471413349 Up 3.31E-07 2.44E-06 PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max] - GO:0003824//catalytic activity - Unigene0002369 485 2 27 0.192770017 2.517303688 3.706926692 Up 0.000113183 0.000607463 -- - - - Unigene0003210 574 29 3 2.361768547 0.236332228 -3.320979305 Down 8.88E-07 6.29E-06 PREDICTED: auxin-induced protein 6B-like [Glycine max] - - - Unigene0069102 394 3 40 0.355939562 4.590683545 3.689004784 Up 7.00E-05 0.000389095 -- - - - Unigene0029610 227 3 40 0.617798183 7.967970558 3.689004784 Up 7.00E-05 0.000389065 -- - - - Unigene0003211 1423 2406 1031 79.03909373 32.7617696 -1.27055312 Down 3.64E-135 1.79E-133 PREDICTED: microtubule-associated protein RP/EB family member 1-like [Glycine max] - - - Unigene0003234 795 162 27 9.525748585 1.535713571 -2.632923311 Down 6.82E-26 1.43E-24 M18-S3Bp [Malus floribunda] - - - Unigene0003248 324 212 104 30.587366 14.51449452 -1.075441547 Down 1.37E-10 1.31E-09 glutaredoxin [Populus trichocarpa] >gi|222847388|gb|EEE84935.1| glutaredoxin [Populus trichocarpa] GO:0043231//intracellular membrane-bounded organelle GO:0005488//binding;GO:0015036//disulfide oxidoreductase activity "GO:0006355//regulation of transcription, DNA-dependent;GO:0048449;GO:0019725//cellular homeostasis" Unigene0003267 1452 239 63 7.694537377 1.961948122 -1.971547695 Down 8.67E-27 1.84E-25 rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] >gi|330252236|gb|AEC07330.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] - GO:0005488//binding;GO:0003824//catalytic activity GO:0044238//primary metabolic process Unigene0003284 612 12 56 0.916602533 4.137616084 2.174431611 Up 4.73E-07 3.44E-06 "PREDICTED: similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances / cadmium ion transmembrane transporter [Vitis vinifera]" GO:0044464//cell part GO:0017111//nucleoside-triphosphatase activity;GO:0032559 GO:0009207 Unigene0051646 219 5 65 1.067276922 13.42093671 3.652478908 Up 2.54E-05 0.000150946 -- - - - Unigene0003290 991 1276 477 60.19054129 21.76498194 -1.467527968 Down 5.10E-90 2.08E-88 PHD finger-related protein [Medicago truncatula] >gi|355512321|gb|AES93944.1| PHD finger-related protein [Medicago truncatula] GO:0044424//intracellular part GO:0046872//metal ion binding - Unigene0021979 875 9 117 0.4808235 6.046323715 3.652478908 Up 2.51E-06 1.70E-05 -- - - - Unigene0009911 495 4 52 0.377751347 4.750198205 3.652478908 Up 4.30E-05 0.000246947 -- - - - Unigene0065629 293 5 64 0.797725754 9.877020159 3.630111095 Up 2.54E-05 0.000150934 -- - - - Unigene0012879 207 14 179 3.161614533 39.10175696 3.628500045 Up 1.11E-07 8.54E-07 -- - - - Unigene0003291 690 818 319 55.41858617 20.90524101 -1.406505229 Down 7.53E-55 2.35E-53 PHD finger-related protein [Medicago truncatula] >gi|355512321|gb|AES93944.1| PHD finger-related protein [Medicago truncatula] GO:0044424//intracellular part GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity GO:0032446//protein modification by small protein conjugation Unigene0003025 268 3 38 0.523284282 6.411540488 3.615004203 Up 7.00E-05 0.000389045 -- - - - Unigene0003293 372 61 21 7.665458277 2.552642181 -1.586380725 Down 3.70E-06 2.45E-05 At1g55340 [Arabidopsis thaliana] >gi|48310451|gb|AAT41823.1| At1g55340 [Arabidopsis thaliana] - - - Unigene0003296 442 33 0 3.490140413 0.001 -11.76906936 Down 6.58E-11 6.41E-10 Histidine-rich glycoprotein OS=Plasmodium lophurae PE=4 SV=1 - - - Unigene0023192 421 12 151 1.332448337 16.21841608 3.605481428 Up 3.94E-07 2.89E-06 -- - - - Unigene0046184 496 6 75 0.565484627 6.837434412 3.59589538 Up 1.46E-05 9.00E-05 -- - - - Unigene0066738 244 2 25 0.383169911 4.633015667 3.59589538 Up 0.000116361 0.000623305 -- - - - Unigene0003318 976 711 362 34.05422586 16.77151672 -1.021820673 Down 1.54E-29 3.46E-28 EST gb|ATTS1136 comes from this gene [Arabidopsis thaliana] - - - Unigene0003330 659 71 13 5.036445783 0.892013699 -2.497268212 Down 1.70E-11 1.75E-10 PREDICTED: ankyrin-2-like [Glycine max] - - - Unigene0003331 422 45 11 4.984840788 1.178674318 -2.080382288 Down 1.82E-06 1.25E-05 ankyrin repeat-containing protein [Arabidopsis thaliana] >gi|332656924|gb|AEE82324.1| ankyrin repeat-containing protein [Arabidopsis thaliana] - - - Unigene0003334 438 280 81 29.88375381 8.36227595 -1.837393824 Down 1.92E-28 4.23E-27 S-adenosylmethionine decarboxylase [Citrus sinensis] - GO:0016831//carboxy-lyase activity GO:0006596//polyamine biosynthetic process Unigene0073849 220 3 37 0.637455398 7.604884626 3.576530055 Up 7.00E-05 0.000389061 -- - - - Unigene0003335 238 149 52 29.26580944 9.879613914 -1.566689613 Down 6.15E-13 7.66E-12 S-adenosylmethionine decarboxylase [Citrus sinensis] - GO:0016831//carboxy-lyase activity GO:0006596//polyamine biosynthetic process Unigene0003336 386 347 84 42.02361404 9.840237214 -2.09443524 Down 3.50E-41 9.43E-40 S-adenosylmethionine decarboxylase uORF [Daucus carota] - GO:0016831//carboxy-lyase activity GO:0006596//polyamine biosynthetic process Unigene0003345 654 10 120 0.714781792 8.29692347 3.537001691 Up 1.37E-06 9.49E-06 VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata] >gi|297326306|gb|EFH56726.1| VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata] - - - Unigene0021502 583 5 61 0.400915344 4.731238778 3.560848432 Up 2.54E-05 0.000150846 -- - - - Unigene0021946 958 5 61 0.243980841 2.8792403 3.560848432 Up 2.54E-05 0.000150821 -- - - - Unigene0003351 476 122 296 11.98130453 28.11890114 1.230755218 Up 7.97E-14 1.15E-12 "ribosomal protein S14 [Gossypium hirsutum] >gi|119368497|ref|YP_913185.1| ribosomal protein S14 [Gossypium barbadense] >gi|325210928|ref|YP_004286002.1| ribosomal protein S14 [Gossypium thurberi] >gi|122201389|sp|Q2L904.1|RR14_GOSHI RecName: Full=30S ribosomal protein S14, chloroplastic >gi|125987681|sp|A0ZZ33.1|RR14_GOSBA RecName: Full=30S ribosomal protein S14, chloroplastic >gi|85687414|gb|ABC73626.1| ribosomal protein S14 [Gossypium hirsutum] >gi|119224859|dbj|BAF41245.1| Ribosomal protein S14 [Gossypium barbadense] >gi|290775790|gb|ADD62286.1| ribosomal protein S14 [Gossypium thurberi]" - - - Unigene0003354 1167 498 231 19.94847569 8.950652788 -1.156213701 Down 1.61E-25 3.34E-24 Protein phosphatase 2C [Medicago truncatula] >gi|355517061|gb|AES98684.1| Protein phosphatase 2C [Medicago truncatula] - - - Unigene0060501 259 2 24 0.360978604 4.190106525 3.537001691 Up 0.000120116 0.000642027 -- - - - Unigene0003383 1768 176 870 4.653520551 22.25105353 2.257479162 Up 0 0 Multidrug and toxin extrusion protein [Medicago truncatula] >gi|355481361|gb|AES62564.1| Multidrug and toxin extrusion protein [Medicago truncatula] - - - Unigene0012405 304 2 24 0.307544271 3.569860493 3.537001691 Up 0.000120116 0.000641739 -- - - - Unigene0003386 636 250 91 18.37528662 6.469904395 -1.505950455 Down 1.24E-19 2.26E-18 conserved hypothetical protein [Ricinus communis] >gi|223543523|gb|EEF45054.1| conserved hypothetical protein [Ricinus communis] - - - Unigene0044995 666 26 312 1.824947385 21.18331632 3.537001691 Up 4.50E-11 4.44E-10 -- - - - Unigene0023477 287 2 24 0.325761179 3.781315644 3.537001691 Up 0.000120116 0.000641883 -- - - - Unigene0001099 290 2 24 0.322391236 3.742198586 3.537001691 Up 0.000120116 0.000641835 -- - - - Unigene0022957 290 2 24 0.322391236 3.742198586 3.537001691 Up 0.000120116 0.000641787 -- - - - Unigene0003392 1273 711 263 26.10913153 9.342022982 -1.482747571 Down 1.03E-51 3.12E-50 AT5g44670/K15C23_12 [Arabidopsis thaliana] >gi|25090160|gb|AAN72243.1| At5g44670/K15C23_12 [Arabidopsis thaliana] - - - Unigene0021820 577 26 308 2.106438403 24.13728897 3.518386012 Up 4.50E-11 4.44E-10 -- - - - Unigene0068696 649 6 71 0.432173151 4.946832877 3.516823809 Up 1.46E-05 9.00E-05 -- - - - Unigene0029823 688 32 378 2.174266473 24.84373843 3.514281614 Up 1.12E-12 1.33E-11 -- - - - Unigene0076679 474 5 59 0.493108957 5.628429835 3.512754144 Up 2.54E-05 0.000150858 -- - - - Unigene0054468 407 12 141 1.378281941 15.66528462 3.506628041 Up 3.94E-07 2.89E-06 -- - - - Unigene0003393 647 311 128 22.47022067 8.945801875 -1.32873158 Down 3.56E-20 6.61E-19 AT5g44670/K15C23_12 [Arabidopsis thaliana] >gi|25090160|gb|AAN72243.1| At5g44670/K15C23_12 [Arabidopsis thaliana] - - - Unigene0064651 377 3 35 0.371989887 4.197979183 3.496359706 Up 7.00E-05 0.000389243 -- - - - Unigene0003424 1909 734 78 17.97386025 1.847575782 -3.282194844 Down 1.24E-139 6.19E-138 ALC-interacting protein 1 [Arabidopsis thaliana] >gi|124301028|gb|ABN04766.1| At5g01370 [Arabidopsis thaliana] >gi|332002950|gb|AED90333.1| ALC-interacting protein 1 [Arabidopsis thaliana] - - - Unigene0003445 553 4 58 0.338131857 4.742599474 3.810020185 Up 4.30E-05 0.000246887 ARGOS [Solanum lycopersicum] >gi|224038410|gb|ACN38309.1| ARGOS [Solanum lycopersicum] - - - Unigene0003475 714 50 132 3.273580474 8.359673312 1.352577119 Up 2.73E-09 2.39E-08 separase [Arabidopsis thaliana] >gi|57019012|gb|AAW32909.1| separase [Arabidopsis thaliana] >gi|332659286|gb|AEE84686.1| separase [Arabidopsis thaliana] - - - Unigene0064092 266 2 23 0.351479167 3.909847207 3.475601146 Up 0.000126956 0.000675863 -- - - - Unigene0034957 405 2 23 0.230848045 2.56794903 3.475601146 Up 0.000126956 0.000675813 -- - - - Unigene0015737 648 2 23 0.144280028 1.604968144 3.475601146 Up 0.000126956 0.000675762 -- - - - Unigene0032032 524 14 160 1.248958413 13.80709402 3.466612363 Up 1.11E-07 8.54E-07 -- - - - Unigene0003505 580 48 116 3.868694828 9.043646583 1.225057684 Up 2.46E-07 1.84E-06 B12D protein [Ipomoea batatas] - - - Unigene0006304 634 14 159 1.032262158 11.3402193 3.457567223 Up 1.11E-07 8.55E-07 -- - - - Unigene0003514 584 161 333 12.88736883 25.78368418 1.000500679 Up 3.75E-14 5.57E-13 PREDICTED: abscisic acid receptor PYL8-like [Glycine max] - - - Unigene0018171 276 3 34 0.508116621 5.570362026 3.45453953 Up 7.01E-05 0.000389467 -- - - - Unigene0003529 518 176 72 15.88305856 6.285159787 -1.337467427 Down 3.67E-12 4.07E-11 PREDICTED: U3 small nucleolar RNA-associated protein 25-like [Glycine max] - - -