Function:
Cut out a designated section of a single sequence or multiple sequences.
Input:
Upload FASTA format sequences or paste the FASTA format sequences in the window.
Parameters:
①Single sequence interception: input sequence name, start site and end site.
②Multiple sequences interception: upload a txt format section file with three columns: sequence name, start site and end site.
③Extend to the left: number of extended characters from the start site to the left.
④Extend to the right: number of extended characters from the end site to the right.
Note: blank means interception of the full sequence.
Output:
Downloadable FASTA files of intercepted sequences.
Case presentation1:
Enter the following four sequences, set: Single segment pattern, set the name of the sequence to seq1, starting position is 3, the end position of 10, to a unit, so the starting position into 2
>seq1 TCATTTAATGAC >seq2 ATGGC >seq3 TCACATGATGCCG >seq4 ATGGAAGC
The output of:
>seq1_2_10 CATTTAATG
Case presentation2:
Click on the item of tags b、Multiple sequences interception ,Under section file input sequence parameters, format as follows, the model for multiple segments
seq1 1 10 seq2 seq3 1 10
The output of:
>seq1_1_10 TCATTTAATG >seq2 ATGGC >seq3_1_10 TCACATGATG