MUSCLE多序列比对







选择文件


输出格式: *


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功能:
多序列比对工具,速度与精度都优于ClustalW


输入:
要求输入的为fasta格式的序列文本或者序列文件


参数:

输出格式见 "输出"


输出:

①fasta:fasta格式输出

②html:以html格式输出内容

③msf:以msf基因格式输出内容

④clw:clustalW比对

⑤clw-strict:严格clustalW比对

示例文件:musclecmp序列比对源文件

输入DNA序列(fasta格式):

>gi|28422838|gb|CB252000.1|CB252000 2003_EST00001 Human HIV associated B-cell immunoblastic lymphoma Homo sapiens cDNA clone hss2-1-6-7, mRNA sequence
TGTGGTCTTCTTTCATTGACGCTCATCAGGGTGGGGAGTGATATATGTTGACTGGAGAGTCTAAAATACA
ACGGACCACTACAATCTCTCGGATATTCCACGTCGGT
>gi|28422842|gb|CB252002.1|CB252002 2003_EST00003 Human HIV associated B-cell immunoblastic lymphoma Homo sapiens cDNA clone hss2-2-9-5, mRNA sequence
CTGGTAGTCTTCGGGAGAGGCTTGAGAGTGTCTACTCACCCCTTCCCCTAAAAAAAAAAAAAAACTGGTT
GNCTCGGCCCTNACCCAGCTATCCAC
>gi|13779443|gb|BG644331.1|BG644331 EST00006 Human HIV associated B-cell centroblastic lymphoma Homo sapiens cDNA clone hss1-332 5' similar to B cell centroblastic lymphoma, HIV-associated, mRNA sequence
GACAGCGGCTGAGGAGGGGAAGAGAGTNCTAAATGATAACAGTCTTTATCCGTTAACGCTGAATAAATGC
CTTTTTTAAAAGTAAAAAAATACGGTCGACTGCGATCTACCAATACTTCTCGCCTGAT

生物云平台

输出结果:

>gi|28422838|gb|CB252000.1|CB252000 2003_EST00001 Human HIV associated B-cell immunoblastic lymphoma Homo sapiens cDNA clone hss2-1-6-7, mRNA sequence
--TGTGGTCTTCTTTCATTGACGCTCATCAGGGTGGGGAGTGA-----------------
----------TATATGTTGAC------------------TGGAGAGTCTAAAATACAACG
GACCACTACAATCT--CTCGGATATTCCACGTCGGT
>gi|28422842|gb|CB252002.1|CB252002 2003_EST00003 Human HIV associated B-cell immunoblastic lymphoma Homo sapiens cDNA clone hss2-2-9-5, mRNA sequence
CTGGTAGTCTTC------------------GGGAGAGGCTTGAGAG--------------
----------TGTCTACTCACCCC---------TTCCCCTAAAAAA--AAAAAAAAACTG
GTTGNCTCGGCCCTNACCCAGCTATCCAC-------
>gi|13779443|gb|BG644331.1|BG644331 EST00006 Human HIV associated B-cell centroblastic lymphoma Homo sapiens cDNA clone hss1-332 5' similar to B cell centroblastic lymphoma, HIV-associated, mRNA sequence
--GACAGC----------------------GGCTGAGGAGGGGAAGAGAGTNCTAAATGA
TAACAGTCTTTATCCGTTAACGCTGAATAAATGCCTTTTTTAAAAG--TAAAAAAATACG
GTCGACTGCGATCT--ACCAATACTTCTCGCCTGAT