Function:
Local alignment between two sequences.
Input:
Upload query sequences and subject sequences in FASTA format.
Parameters:
①E value:The default value is 10.
②Output format: Different output formats will provide different levels of details about alignment result.
③The introduction of different alignment programs is as follow:
Program | Query | Subject | Function |
---|---|---|---|
blastn | nucleotide sequence | nucleotide sequence | search nucleotide databases using a nucleotide query |
blastp | protein | protein | search protein databases using a protein query |
blastx | nucleotide sequence | protein | search protein databases using a translated nucleotide query |
tblastn | protein | nucleotide sequence | search translated nucleotide databases using a protein query |
tblastx | nucleotide sequence | nucleotide sequence | search translated nucleotide databases using a translated nucleotide query |
Output:
The program provide 11 output formats for your selection.
>gi|397824|dbj|D17397.1|DOGCYP2D Canis lupus familiaris CYP2D mRNA for P-450 2D, complete cds GAGCACCCTGGCTGGCCAGCCCCAGGTCCCTGGTGTGGTGAGGGACACCGGCGTGCCCCACGAGCCCAGC GGGCACTGAGACAGCTATGGGGCTGCTGACCGGGGACACGCTGGGGCCCCTGGCCGTAGCCGTGGCCATC TTCCTGCTCCTGGTAGACCTGATGCACCGGCGCAGGCGCTGGGCCACACGCTACCCGCCAGGCCCCACGC CAGTGCCCATGGTGGGCAACCTGCTGCAGATGGACTTCCAGGAACCAATCTGCTACTTCAGCCAGCTGCA AGGCCGCTTCGGAAACGTGTTCAGCCTGGAGCTGGCCTGGACGCCGGTGGTCGTGCTCAACGGCCTGGAG GCGGTGCGCGAGGCCCTGGTGCACCGCAGCGAGGACACTGCCGACCGCCCACCTATGCCGATCTATGACC ACCTGGGTTTGGGGCCAGAATCCCAAGGGTTGTTCCTGGCGCGCTACGGGCGCGCGTGGCGCGAGCAGCG GCGCTTCTCGCTGTCCACCCTGCGCAACTTCGGCCTGGGCAGGAAGTCCCTGGAGCAGTGGGTGACCGAG GAGGCCTCGTGCCTCTGCGCGGCCTTCGCCGAGCAGGCGGGCCGCCCCTTCGGCCCCGGCGCGCTGCTGA ACAAGGCGGTGAGCAACGTGATCTCGTCGCTCACCTACGGGCGCCGCTTCGAGTACGACGACCCGCGGCT GCTCCAGCTGCTGGAGCTCACCCAGCAGGCGCTGAAGCAGGACTCCGGCTTCCTGCGTGAGGCCCTGAAC TCCATCCCCGTGCTCCTGCACATCCCGGGACTGGCCAGCAAGGTCTTCTCCGCGCAGAAGGCCATCATAA CCCTGACAAATGAAATGATCCAGGAGCACAGGAAGACCCGGGACCCCACCCAGCCACCCCGACACCTGAT CGACGCCTTCGTGGATGAGATAGAAAAAGCCAAAGGGAACCCCAAGACCAGCTTCAATGAGGAGAACCTG TGCATGGTGACCTCTGACCTGTTCATCGCTGGGATGGTGTCCACCTCAATCACGCTGACCTGGGCCCTCC TGCTCATGATCCTGCACCCGGACGTGCAGCGACGTGTCCAGCAGGAGATAGATGAGGTGATAGGGCGGGA GCAGCTACCAGAGATGGGAGACCAGACCCGTATGCCCTTCACCGTGGCCGTGATCCATGAGGTGCAGCGT TTTGGGGACATCGTCCCACTCGGTGTGCCCCACATGACGTCCCGAGACACTGAAGTGCAGGGCTTCCTCA TCCCCAAGGGGACGACACTCATCACCAACCTGTCGTCAGTGCTAAAGGACGAGAAGGTCTGGAAGAAGCC CTTCCGCTTCTACCCCGAGCACTTCCTGGACGCCCAGGGCCACTTCGTCAAGCATGAGGCCTTCATGCCC TTCTCTGCAGGCCGCCGCGTCTGCCTCGGGGAGCCCCTGGCCCGCATGGAGCTCTTCCTCTTCTTCACCT GCCTCCTGCAGCGCTTCAGCTTTTCAGTGCCTGCGGGGCAGCCCCGGCCCAGCGACCACGGGGTCTTCAC CTTCCTGAAGGTTCCAGCCCCCTTCCAGCTCTGTGTGGAGCCTCGCTAGGGGCAGGAACCACCACCCCCC GCCGCCCGGCTCCTCAGCAGGGGCCCGAGGTACAATAAACCAGTTTGGTGGCTCC