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Omicshare引用量指数增长 又新增一篇NC

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    发表于 2018.11.24 09:53:56 | 显示全部楼层 |阅读模式
    继8月份引用文章超过100篇之后,过去3个月,又新增引用OmicShare 的文章47篇,其中SCI文章42篇,其余为中文核心期刊、硕博论文等。据不完全统计,引用文章目前已累计152篇。
    新增的引用文章中,影响因子最高的一篇发表在《Nature Communications》(IF= 12.353)上。文章的作者为中山大学附属第一医院的张弩教授团队(基迪奥合作客户)。文章使用OmicShare的edgeR差异分析工具进行了差异表达分析,通过翻译组测序等技术手段揭示了lncRNA形成环状RNA后可翻译功能多肽。



    新增的47篇引用文章如下:

    Zhang M, Zhao K, Xu X, et al. A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma[J]. Nature communications, 2018, 9(1): 4475.
    Wan X, Zou L H, Zheng B Q, et al. Transcriptomic profiling for prolonged drought in Dendrobium catenatum[J]. Scientific data, 2018, 5: 180233.
    Zou L H, Wan X, Deng H, et al. RNA-seq transcriptomic profiling of crassulacean acid metabolism pathway in Dendrobium catenatum[J]. Scientific data, 2018, 5: 180252.
    Li H, Su J Q, Yang X R, et al. Distinct rhizosphere effect on active and total bacterial communities in paddy soils[J]. Science of The Total Environment, 2019, 649: 422-430.
    Ni M, Liu X, Wu J, et al. Identification of Candidate Biomarkers Correlated With the Pathogenesis and Prognosis of Non-small Cell Lung Cancer via Integrated Bioinformatics Analysis[J]. Frontiers in genetics, 2018, 9: 469.
    Chen L, Peng W, Kong S, et al. Genetic mapping of head size related traits in common carp (Cyprinus carpio)[J]. Frontiers in genetics, 2018, 9: 448.
    Khan N, Hu C, Khan W A, et al. Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses[J]. Scientific reports, 2018, 8(1): 16265.
    Yuan H, Zeng X, Yang Q, et al. Gene coexpression network analysis combined with metabonomics reveals the resistance responses to powdery mildew in Tibetan hulless barley[J]. Scientific reports, 2018, 8(1): 14928.
    Wang Y, Zhao H, Fei D, et al. Discrepant effects of copper (II) stress on different types of skeletal muscles in chicken: Elements and amino acids[J]. Ecotoxicology and environmental safety, 2019, 167: 227-235.Sun J L, Zhao L L, Wu H, et al. Analysis of miRNA-seq in the liver of common carp (Cyprinus carpio L.) in response to different environmental temperatures[J]. Functional & integrative genomics, 2018: 1-16.
    Fang C, Li L, Zhang P, et al. Lsi1 modulates the antioxidant capacity of rice and protects against ultraviolet-B radiation[J]. Plant Science, 2018.
    Feng G, Xu L, Wang J, et al. Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)[J]. BMC genomics, 2018, 19(1): 727.Chen Y, Li X, Su L, et al. Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour[J]. BMC genomics, 2018, 19(1): 805.
    Qiu C Z, Zhou Q Z, Liu T T, et al. Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics[J]. BMC genomics, 2018, 19(1): 788.
    Wang Y, Ma J, Qiu W, et al. Guanidinoacetic Acid Regulates Myogenic Differentiation and Muscle Growth Through miR-133a-3p and miR-1a-3p Co-mediated Akt/mTOR/S6K Signaling Pathway[J]. International journal of molecular sciences, 2018, 19(9): 2837.
    Meng C, Yan Y, Liu Z, et al. Systematic Analysis of Cotton Non-specific Lipid Transfer Protein Family Revealed a Special Group That Is Involved in Fiber Elongation[J]. Frontiers in Plant Science, 2018, 9.
    Pan J, Wang G, Wen H, et al. Differential Gene Expression Caused by the F and M Loci Provides Insight Into Ethylene-Mediated Female Flower Differentiation in Cucumber[J]. Frontiers in plant science, 2018, 9.
    Meng C, Yan Y, Liu Z, et al. Systematic Analysis of Cotton Non-specific Lipid Transfer Protein Family Revealed a Special Group That Is Involved in Fiber Elongation[J]. Frontiers in Plant Science, 2018, 9.
    Luo H M, Hu Y, Pan J P, et al. Gene Expression Analysis Reveals Novel Gene Signatures Between Young and Old Adults in Human Prefrontal Cortex[J]. Frontiers in aging neuroscience, 2018, 10: 259.
    Wang N, Zhang S, Zhu F, et al. Proteomic study on the new potential mechanism and biomarkers of diabetes[J]. PROTEOMICS–Clinical Applications, 2018: 1800043.
    Huang H, Yao Q, Xia E, et al. Metabolomics and Transcriptomics Analyses Reveal Nitrogen Influences on the Accumulation of Flavonoids and Amino Acids in Young Shoots of Tea Plant (Camellia sinensis L.) Associated with Tea Flavor[J]. Journal of agricultural and food chemistry, 2018, 66(37): 9828-9838.
    Wang Y, Zhang X F, Yang S, et al. Metabolite and Transcriptome analyses indicate the involvement of lignin in programmed changes in peach fruit texture[J]. Journal of Agricultural and Food Chemistry, 2018.
    Ge Q, Zhang S, Chen L, et al. Mulberry leaf regulates differentially expressed genes in diabetic mice liver based on RNA-Seq analysis[J]. Frontiers in physiology, 2018, 9: 1051.
    Liu X, Liu K, Shan B, et al. A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs[J]. Journal of animal science and biotechnology, 2018, 9(1): 76.
    Wang Y, Zhao H, Shao Y, et al. Copper or/and arsenic induces autophagy by oxidative stress-related PI3K/AKT/mTOR pathways and cascaded mitochondrial fission in chicken skeletal muscle[J]. Journal of inorganic biochemistry, 2018, 188: 1-8.
    Gao J, Qiu X, Xi G, et al. Downregulation of GSDMD attenuates tumor proliferation via the intrinsic mitochondrial apoptotic pathway and inhibition of EGFR/Akt signaling and predicts a good prognosis in non‑small cell lung cancer[J]. Oncology reports, 2018, 40(4): 1971-1984.
    Chen B, Xu J, Cui J, et al. Transcriptional differences provide insight into environmental acclimatization in wild amur ide (Leuciscus waleckii) during spawning migration from alkalized lake to freshwater river[J]. Genomics, 2018.
    Wang X, Gao Q, Wang W, et al. The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala[J]. BMC microbiology, 2018, 18(1): 131.
    Zhao H, Wang Y, Shao Y, et al. Deciphering the ionic homeostasis, oxidative stress, apoptosis, and autophagy in chicken intestine under copper (II) stress[J]. Environmental Science and Pollution Research, 2018: 1-11.
    Wang Q, Zhang X, Lei S, et al. RNA sequence analysis reveals pathways and candidate genes associated with liver injury in a rat pancreatitis model[J]. Pancreatology, 2018, 18(7): 753-763.
    Khan N, Hu C, Amjad Khan W, et al. Evolution and Expression Divergence of E2 Gene Family under Multiple Abiotic and Phytohormones Stresses in Brassica rapa[J]. BioMed research international, 2018, 2018.
    Guan H, Huang B, Chen M, et al. Genome-wide identification, phylogeny analysis, expression profiling, and determination of protein-protein interactions of the LEUNIG gene family members in tomato[J]. Gene, 2018, 679: 1-10.
    Hao L, Qiao X. Genome-wide identification and analysis of the CNGC gene family in maize[J]. PeerJ, 2018, 6: e5816.
    Huang X, Liu D, Zhang R, et al. Transcriptional Responses in Defense-Related Genes of Sitobion avenae (Hemiptera: Aphididae) Feeding on Wheat and Barley[J]. Journal of economic entomology, 2018.
    Li R, Yuan S, He Y, et al. Genome-Wide Identification and Expression Profiling Analysis of the Galactinol Synthase Gene Family in Cassava (Manihot esculenta Crantz)[J]. Agronomy, 2018, 8(11): 250.
    Pei M, Gu C, Zhang S. Genome-wide identification and expression analysis of genes associated with peach (Prunus persica) fruit ripening[J]. Scientia Horticulturae, 2019, 246: 317-327.
    Tang W, Ouyang C, Liu L, et al. Genome-wide identification of the fatty acid desaturases gene family in four Aspergillus species and their expression profile in Aspergillus oryzae[J]. AMB Express, 2018, 8(1): 169.
    Ling H, Huang N, Wu Q, et al. Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction[J]. Tropical Plant Biology, 2018, 11(3-4): 163-176.
    Li Z, Zhang X, Aweya J J, et al. Formulated diet alters gut microbiota compositions in marine fish Nibea coibor and Nibea diacanthus[J]. Aquaculture Research.
    Jiang H, Xiao Y, Zhu S. Genome-wide identification, systematic analysis and characterization of SRO family genes in maize (Zea mays L.)[J]. Acta Physiologiae Plantarum, 2018, 40(10): 176.
    Yuan J, Liu L, Zhang Y, et al. Molecular Processes and Hub Genes of Acropora palmata in Response to Thermal Stress and Bleaching[J]. Journal of Coastal Research, 2018.
    Zhao H, Du X, Zhang K, et al. Weighted Correlation Network Analysis (WGCNA) of Japanese Flounder (Paralichthys olivaceus) Embryo Transcriptome Provides Crucial Gene Sets for Understanding Haploid Syndrome and Rescue by Diploidization[J]. Journal of Ocean University of China, 2018, 17(6): 1441-1450.
    Li L, Pan Z, Yang S, et al. Identification of key gene pathways and coexpression networks of islets in human type 2 diabetes[J]. Diabetes, metabolic syndrome and obesity: targets and therapy, 2018, 11: 553.
    肖楠, 陈浩, 张伯瑞, 等. 基于网络药理学预测降酸除痹方治疗痛风作用靶点与通路[J]. 沈阳药科大学学报, 2018, 8: 669-674.
    HAN H A N, ZHANG H, CHEN Y, et al. Different obesity phenotypes correlated with the PI3K-AKT signaling pathway in tree shrews[J]. bioRxiv, 2018: 361063.
    nan Zhu Y, Wang L Z, Li C C, et al. Artificial Selection on Storage Protein 1 Contributes to Increase of Hatchability during Silkworm Domestication[J]. bioRxiv, 2018: 388843.
    Li P. Immunomodulatory effects of MicroRNAs and fructooligosaccharide during Salmonella Enteritidis Infection in young chickens[D]. Université de Liège, Liège, Belgique, 2018.



    综合之前的数据,影响因子最高的一篇发表在老牌期刊《Hepatology》(IF= 14.079)上,有3篇文章发表在《Nature Communications》(IF= 12.353)上。此外,也发表在PLOS BIOLOGY(IF=9.163)、eLife(IF= 7.616)、The Plant Journal(IF= 5.775)、Journalof Experimental Botany (IF= 5.354)、Cellular Physiology and Biochemistry(IF=5.500)等100多种期刊杂志上。



    结合前几次的统计数据来看,自去年2月份OmicShare云平台3.0上线以来,引用OmicShare 的文章数量呈指数增长(图1)。



    图1 引用OmicShare文章数量的增长情况 这些文章中,OmicShare tools使用次数最高的工具是热图(58篇)、GO和KEGG富集分析(49篇)以及韦恩图(12篇),详情见下图。



    图2 不同OS tools的引用文章数 从文章作者所属地区来看,作者(国内)分布在全国的29个省(直辖市、自治区),见图3。引用次数较多的5家单位分别为四川农业大学(10篇)、南京农业大学(9篇)、东北林业大学(8篇)、西北农林科技大学(8篇)、福建农林大学(7篇)和华南农业大学(6篇)。此外,还有清华大学、南开大学、厦门大学、中山大学、中山大学附属第一医院、空军军医大学等100多家高校科研院所发表的多篇文章引用了OmicShare。




    图3 文章引用OmicShare的科研单位的地理分布(局部) 此外,OmicShare tools已从上次(8月9日)统计时的54个增长到目前的59个,新增的工具包括动态GO富集分析、动态KEGG富集分析、动态PCoA、circos图和秩和检验。到目前为止,OmicShare tools已为3万用户提供专业的数据分析和可视化服务,用户使用工具已达16万次! 今天的内容就到这里啦,欢迎大家前去使用~


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